Package: BayesianDEB
Title: Bayesian Dynamic Energy Budget Modelling
Version: 0.2.1
Date: 2026-06-17
Authors@R: c(
    person("Branimir K.", "Hackenberger",
           email = "branimir@sciom.hr",
           role = c("aut", "cre")),
    person("Tamara", "Djerdj",
           role = "aut"),
    person("Domagoj K.", "Hackenberger",
           role = "aut")
    )
Description: Provides a Bayesian framework for Dynamic Energy Budget
        (DEB) modelling via 'Stan'. Implements the standard DEB model
        of Kooijman (2010, <doi:10.1017/CBO9780511805400>) as a
        state-space model with Hamiltonian Monte Carlo inference
        (Carpenter et al., 2017, <doi:10.18637/jss.v076.i01>). Includes
        individual-level growth models, growth-reproduction models,
        hierarchical multi-individual models with partial pooling, and
        toxicokinetic-toxicodynamic (TKTD) models for ecotoxicology
        following the DEBtox framework (Jager et al., 2006,
        <doi:10.1007/s10646-006-0060-x>). Supports prior specification
        from biological knowledge, convergence diagnostics (Vehtari et
        al., 2021, <doi:10.1214/20-BA1221>), posterior predictive
        checks, derived quantity estimation, and visualisation via
        'ggplot2'.
License: MIT + file LICENSE
URL: https://github.com/sciom/BayesianDEB
BugReports: https://github.com/sciom/BayesianDEB/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
SystemRequirements: CmdStan
        (https://mc-stan.org/users/interfaces/cmdstan)
Depends: R (>= 4.1.0)
Imports: posterior (>= 1.5.0), rlang (>= 1.1.0), cli (>= 3.6.0),
        ggplot2 (>= 3.4.0), bayesplot (>= 1.10.0), deSolve (>= 1.40),
        stats, utils
Suggests: cmdstanr (>= 0.8.0), testthat (>= 3.0.0), loo (>= 2.6.0),
        digest, dplyr (>= 1.1.0), tidyr (>= 1.3.0), gridExtra, knitr,
        rmarkdown, withr
Additional_repositories: https://stan-dev.r-universe.dev
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: true
Config/pak/sysreqs: libicu-dev
Repository: https://sciom.r-universe.dev
Date/Publication: 2026-06-29 18:51:08 UTC
RemoteUrl: https://github.com/sciom/BayesianDEB
RemoteRef: HEAD
RemoteSha: 06cffd795cc6e019510c3b5fe8b65df4ec41cd77
NeedsCompilation: no
Packaged: 2026-06-29 20:19:18 UTC; root
Author: Branimir K. Hackenberger [aut, cre],
  Tamara Djerdj [aut],
  Domagoj K. Hackenberger [aut]
Maintainer: Branimir K. Hackenberger <branimir@sciom.hr>